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The numbers of fungi: contributions from traditional taxonomic studies and challenges of metabarcoding  ( SCI-EXPANDED收录)   被引量:64

文献类型:期刊文献

英文题名:The numbers of fungi: contributions from traditional taxonomic studies and challenges of metabarcoding

作者:Phukhamsakda, Chayanard Nilsson, Rolf Henrik Bhunjun, Chitrabhanu S. de Farias, Antonio Roberto Gomes Sun, Ya-Ru Wijesinghe, Subodini N. Raza, Mubashar Bao, Dan-Feng Lu, Li Tibpromma, Saowaluck Dong, Wei Tennakoon, Danushka S. Tian, Xing-Guo Xiong, Yin-Ru Karunarathna, Samantha C. Cai, Lei Luo, Zong-Long Wang, Yong Manawasinghe, Ishara S. Camporesi, Erio Kirk, Paul M. Promputtha, Itthayakorn Kuo, Chang-Hsin Su, Hong-Yan Doilom, Mingkwan Li, Yu Fu, Yong-Ping Hyde, Kevin D.

第一作者:Phukhamsakda, Chayanard

通信作者:Fu, YP[1];Hyde, KD[1];Fu, YP[2];Hyde, KD[2];Hyde, KD[3];Hyde, KD[4]

机构:[1]Jilin Agr Univ, Engn Res Ctr, Chinese Minist Educ Edible & Med Fungi, Changchun 130118, Jilin, Peoples R China;[2]Jilin Agr Univ, Coll Plant Protect, Changchun 130118, Jilin, Peoples R China;[3]Gothenburg Global Biodivers Ctr, S-40530 Gothenburg, Sweden;[4]Univ Gothenburg, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden;[5]Mae Fah Luang Univ, Ctr Excellence Fungal Res, Chiang Rai 57100, Thailand;[6]Mae Fah Luang Univ, Sch Sci, Chiang Rai 57100, Thailand;[7]Guizhou Univ, Coll Agr, Dept Plant Pathol, Guiyang 550025, Guizhou, Peoples R China;[8]Chinese Acad Sci, Inst Microbiol, State Key Lab Mycol, Beijing 100101, Peoples R China;[9]Dali Univ, Coll Agr & Biol Sci, Dali 671003, Yunnan, Peoples R China;[10]Chiang Mai Univ, Fac Agr, Dept Entomol & Plant Pathol, Chiang Mai 50200, Thailand;[11]Kunming Inst Bot, Ctr Mt Futures, Kunming 650201, Yunnan, Peoples R China;[12]Qujing Normal Univ, Coll Biol Resource & Food Engn, Ctr Yunnan Plateau Biol Resources Protect & Utili, Qujing 655011, Yunnan, Peoples R China;[13]Zhongkai Univ Agr & Engn, Innovat Inst Plant Hlth, Guangzhou 510225, Peoples R China;[14]Natl Chiayi Univ, Dept Plant Med, 300 Syuefu Rd, Chiayi 60004, Taiwan;[15]Guizhou Inst Technol, Sch Food & Pharmaceut Engn, Guiyang 550003, Peoples R China;[16]Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Kunming 650201, Yunnan, Peoples R China;[17]AMB Grp, Micol Forlivese Antonio Cicognani, Via Roma 18, Forli, Italy;[18]AMB, Circolo Micol Giovanni Carini, CP 314, Brescia, Italy;[19]Soc Studi Nat Romagna, CP 144, Bagnacavallo, RA, Italy;[20]Royal Bot Garden Kew, Biodivers Informat & Spatial Anal, London TW9 3AE, England;[21]Chiang Mai Univ, Fac Sci, Dept Biol, Chiang Mai, Thailand;[22]Chiang Mai Univ, Res Ctr Bioresources Agr Ind & Med, Chiang Mai, Thailand;[23]Chiang Mai Univ, Fac Sci, Environm Sci Res Ctr, Chiang Mai, Thailand

第一机构:Jilin Agr Univ, Engn Res Ctr, Chinese Minist Educ Edible & Med Fungi, Changchun 130118, Jilin, Peoples R China

通信机构:corresponding author), Jilin Agr Univ, Engn Res Ctr, Chinese Minist Educ Edible & Med Fungi, Changchun 130118, Jilin, Peoples R China;corresponding author), Jilin Agr Univ, Coll Plant Protect, Changchun 130118, Jilin, Peoples R China;corresponding author), Mae Fah Luang Univ, Ctr Excellence Fungal Res, Chiang Rai 57100, Thailand;corresponding author), Zhongkai Univ Agr & Engn, Innovat Inst Plant Hlth, Guangzhou 510225, Peoples R China.

年份:0

外文期刊名:FUNGAL DIVERSITY

收录:;Scopus(收录号:2-s2.0-85127250176);WOS:【SCI-EXPANDED(收录号:WOS:000788477900001)】;

基金:Chayanard Phukhamsakda (Postdoctoral number 271007) would like to thank Jilin Agricultural University, National Natural Science Foundation of China (NSFC) for granting a Youth Science Fund Project (number 32100007). Chayanard Phukhamsakda would like to thank Song Wang and Qi Zhao for their valuable help with the entries and Dr. Shaun Pennycook from Manaaki Whenua, Landcare Research, New Zealand. Kevin D Hyde thanks Chiang Mai University for the award of Visiting Professor and the Thailand Research Fund, grant RDG6130001, titled "Impact of climate change on fungal diversity and biogeography in the Greater Mekong Subregion". Yong-Ping Fu would like to thank the National Science and Technology Fundamental Resources Investigation Program of China (number 2021FY100900) and the Program of Creation and Utilization of Germplasm of Mushroom Crop of "111" Project (No. D17014). Li Lu would like to thank the Mae Fah Luang University for the award of a fee-less scholarship and Center for Mountain Futures, Kunming Institute of Botany, Chinese Academy of Science and Center of Excellence in Fungal Research for the facilities provided for her PhD. Dan-Feng Bao would like to thank the National Natural Science Foundation of China (Project ID: 31970021, 32060005) and Yunnan Fundamental Research Project (grant NO. 202101AU070137) for the financial and laboratory support. Saowaluck Tibpromma thanks International Postdoctoral Exchange Fellowship Program (number Y9180822S1), CAS President's International Fellowship Initiative (PIFI) (number 2020PC0009), China Postdoctoral Science Foundation and the Yunnan Human Resources, and Social Security Department Foundation for funding her postdoctoral research. This research was partially supported by Chiang Mai University. Mubashar Raza thanks CAS President's International Fellowship Initiative (PIFI) for funding his postdoctoral research (Grant No. 2020PB0115) and the National Science Foundation of China (NSFC, project code 32050410295). Samantha C. Karunarathna thanks CAS President's International Fellowship Initiative (PIFI) young staff under the grant number: 2020FYC0002 for funding his postdoctoral research and the National Science Foundation of China (NSFC) for funding this research work under project code 31750110478.

语种:英文

外文关键词:12 new taxa; Ascomycota; Fungal diversity; Fungal numbers; High-throughput sequencing; Host-specificity

摘要:The global diversity of fungi has been estimated using several different approaches. There is somewhere between 2-11 million estimated species, but the number of formally described taxa is around 150,000, a tiny fraction of the total. In this paper, we examine 12 ascomycete genera as case studies to establish trends in fungal species descriptions, and introduce new species in each genus. To highlight the importance of traditional morpho-molecular methods in publishing new species, we introduce novel taxa in 12 genera that are considered to have low species discovery. We discuss whether the species are likely to be rare or due to a lack of extensive sampling and classification. The genera are Apiospora, Bambusicola, Beltrania, Capronia, Distoseptispora, Endocalyx, Neocatenulostroma, Neodeightonia, Paraconiothyrium, Peroneutypa, Phaeoacremonium and Vanakripa. We discuss host-specificity in selected genera and compare the number of species epithets in each genus with the number of ITS (barcode) sequences deposited in GenBank and UNITE. We furthermore discuss the relationship between the divergence times of these genera with those of their hosts. We hypothesize whether there might be more species in these genera and discuss hosts and habitats that should be investigated for novel species discovery.

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